Researchers: G. Elisabeta Marai, A.M. Smith, W. Xu, Y. Sun, J.R. Faeder

Modern biological experiments generate large amounts of data describing intracellular dynamics. Rule-based languages for describing intracellular biochemistry allow for the construction and simulation of detailed models with unprecedented scope and precision. Rule-Based Models (RBM) can be used to suggest new hypotheses and new ideas for future experimentation.

Rule-based models can be difficult to understand and time consuming to debug. RuleBender is a free tool for constructing, debugging, simulating and analyzing rule-based biological models in the BioNetGen language. The MOSBIE extension further provides a tool for the comparison and analysis of biochemical model families.

Email: gmarai@uic.edu

Date: February 1, 2010 - January 31, 2015

Related Entries

Directory:

• G. Elisabeta Marai

Events:

• “RuleBender” Recognized with Test of Time Award
• EVL Announces New Faculty Member: G. Elisabeta Marai

Research:

• MOSBIE: A Tool for Comparison and Analysis of Rule-Based Biochemical Models

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