MOSBIE: A Tool for Comparison and Analysis of Rule-Based Biochemical Models
G. Elisabeta Marai, John R. Wenskovitch, Leonard A. Harris, Jose-Juan Tapia, James R. Faeder
February 1, 2013 - January 31, 2015

Mechanistic models that describe the dynamical behaviors of biochemical systems are common in computational systems biology, especially in the realm… Read more

FixingTIM: Interactive Exploration of Sequence and Structural Data to Identify Functional Mutations in Protein Families
G. Elisabeta Marai, Timothy Luciani, J. Wenskovitch, K. Chen, D. Koes, T. Travers
January 1, 2013 - December 31, 2019

We present the design and implementation of a visual mining and analysis tool to help identify protein mutations across family structural models, and… Read more

RuleBender: Rule Based Modeling and Simulation with RuleBender
G. Elisabeta Marai, A.M. Smith, W. Xu, Y. Sun, J.R. Faeder
February 1, 2010 - January 31, 2015

Modern biological experiments generate large amounts of data describing intracellular dynamics. Rule-based languages for describing intracellular… Read more

Predictive Computational Models for Orthopaedics
G. Elisabeta Marai, M. A. Haque
January 1, 2010 - Ongoing

We developed a framework for integrating measured data - such as medical images, tracked motion, and anatomy-book knowledge - into the… Read more

Image-based Measurements and Models
G. Elisabeta Marai
January 1, 2001 - Ongoing

With appropriate tools, models of small structures that are currently not measurable directly can be inferred from medical image data. We introduced… Read more